NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM31_10194488

Scaffold RCM31_10194488


Overview

Basic Information
Taxon OID3300001851 Open in IMG/M
Scaffold IDRCM31_10194488 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1209
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAfu?, Para, Brazil
CoordinatesLat. (o)-0.156917Long. (o)-50.62255Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013293Metagenome / Metatranscriptome272N
F067729Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
RCM31_101944882F067729N/AMKKLQKEFTANYDKVGNNKFVQLRKENGVAMYERLNMDGTHRSYEVFIVKVVEKGTPLPGGNKVQETYEQYPGCAAFGRTAHDCKTMDVAETRFAELVEKVKASAEAKLASLGLTADEIAALTK*
RCM31_101944883F013293N/AMNDMIDTNSDLRNLITITAAEVYTEQPELTEEELEAADDIRFHTELTDYVNTLPIPTEEENTRYAEKMNLLASIRAEIPELNIVEEETESYAVPAGRYDHIYTMGTI*NKLS*HRYISNLYYF*
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