Basic Information | |
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Taxon OID | 3300001851 Open in IMG/M |
Scaffold ID | RCM31_10043558 Open in IMG/M |
Source Dataset Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2552 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Afu?, Para, Brazil | |||||||
Coordinates | Lat. (o) | -0.156917 | Long. (o) | -50.62255 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001840 | Metagenome / Metatranscriptome | 627 | Y |
F006260 | Metagenome / Metatranscriptome | 377 | Y |
F010397 | Metagenome / Metatranscriptome | 304 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
RCM31_100435583 | F010397 | AGGAG | MNPNEFERTKPIVTMQKINDLISLIDEERVKTEILYKDRVRSLETISELLKDMKNSFKKGE* |
RCM31_100435584 | F001840 | N/A | MKEPDSKFLICDCYQHGLLVEKYPHDEEISLSIFERGLEGRILSFSERLRWCWQILRYGSPWSDFIILNTENQKQLKEFLK* |
RCM31_100435586 | F006260 | AGGA | METELIIKDKVINPIVIQHDDLKFDGKNITIPGYYVDIILDYISDYNLSKLSQADLDDHAAFRNFLLDIQEYKNQGN* |
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