Scaffold RCM31_10035780

Overview

Basic Information

• Taxon OID: 3300001851
• Scaffold ID: RCM31_10035780
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1746
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Afu?, Para, Brazil
• Coordinates
  • Lat. (^o): -0.156917
  • Long. (^o): -50.62255

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F056602	Metagenome	137	N
F074878	Metagenome / Metatranscriptome	119	N
F076087	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
RCM31_100357801	F015209	N/A	MNSYRHKALSLWSALLAEERWHKFESEHCKPSCKGWNGWAPYCECFENHCTFVPKGDIDNMELVIIAKPIDEVLRNIQVIP*
RCM31_100357802	F056602	AGG	MSNWTKGFIGVAIASQIVLFVILFGCKAGDAFYITGVDMFGIVLSSICSLVYIPAILVSYDSDKIRKKLDEQLQA*
RCM31_100357803	F015472	AGGAGG	MAHYYLNNGGTRWVTDNKIRVVGDVNGKQYNKMRQPMFWEALGNFAVVYVRVGRTVYRGFSEDNNGVIELNLGKCKVVR*
RCM31_100357804	F074878	N/A	MSYTIAMNTTDKVIVKFRSRSPRLLFSAYYNGILFASGSNAQELGEDYARKYGTEWVLQHGNKFYTQGGVK*
RCM31_100357806	F076087	GGAGG	MYSDAEMEDVLFPHMMTDEELDEQFDNEPDCEDPWSEAWMDANALESAGWGEDDGCAGDDW*