Scaffold RCM31_10018328

Overview

Basic Information

• Taxon OID: 3300001851
• Scaffold ID: RCM31_10018328
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4430
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Afu?, Para, Brazil
• Coordinates
  • Lat. (^o): -0.156917
  • Long. (^o): -50.62255

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F009741	Metagenome / Metatranscriptome	313	Y
F019092	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM31_1001832811	F019092	AGGAG	MSVPILGSKPVDSEPTFRLLYCMVCDTLEELPPYDGEPEFDHLLAIACEQHVFPSGEPHKGRLFSPVSLRAWAERTTRKEMIEQIKGGGSKGLAEFDDKFYDSRSTFMEDAMTCYKAHNKPKDGCVDWQREDKLLIPNTIKERKAEGMGSYKDSPGPKTYLCNFCPVAIGVAQRKRTLMGME*
RCM31_100183282	F009741	GAGG	MTTKFDGRYDRTKPWQNVPDNKGRVLPDPADPVAPRWQYNGPWSSNMERLTSQALAVATIPGAELQALVRPPLPQVRLFPDRYGYDRRQPGIEDVVSIDRNYVEPRISWYSGGVAGYSAADRNALGSN*
RCM31_100183286	F005167	GAGG	MAVNSSRSMNGSLNEGSTDGKYRKVRPDTEVIAGAGDQATVNNRQSLHPFYGYGFITSEYPNKVNPGK*