Scaffold RCM37_1108032

Overview

Basic Information

• Taxon OID: 3300001850
• Scaffold ID: RCM37_1108032
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ábidos, Para, Brazil
• Coordinates
  • Lat. (^o): -1.919017
  • Long. (^o): -55.525717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020339	Metagenome / Metatranscriptome	224	Y
F053790	Metagenome / Metatranscriptome	140	Y
F062691	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM37_11080321	F053790	GGAGG	MKRYYRCVVCGHILSEEDYASLPDSVGCPECGVSKEDYELVVE*
RCM37_11080322	F020339	GGAG	MSNTTKIAKQIAETNPKLSKAYKYDLALREFDNKVELIGLVDDPTYDIADFRGREMLFPKKWVTLDVLDASTEVTV*
RCM37_11080323	F062691	GGAGG	MSNIKLITFNTQQTIIADIIDEGDIGVKIKNPVQVIAVPPKSANDTGGVGFAPYLAYTEEFDTGITIKQSQVFCITTPVADLLENYRRMFSRIELA