Scaffold RCM37_1043567

Overview

Basic Information

• Taxon OID: 3300001850
• Scaffold ID: RCM37_1043567
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2426
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ábidos, Para, Brazil
• Coordinates
  • Lat. (^o): -1.919017
  • Long. (^o): -55.525717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F057311	Metagenome / Metatranscriptome	136	Y
F081259	Metagenome / Metatranscriptome	114	Y
F091391	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM37_10435673	F091391	N/A	MATIYTFTPKPVVKNDTELEKLRSKLLELHEVRDTINKEIRYIKDAIILLEKGEQ*
RCM37_10435674	F024533	AGAAG	MPIQKTCPRCGVTHKKRGPYCSMSCANVRVHTEEDKKIRSQKLIEYHQTPEGAATRAKSAKIITAFNKGEEVEMVDVDDYAINIPDVTDYVAEYDITWDRAEKW*
RCM37_10435676	F057311	GGCGG	MQRKSSKQKVKNLKLDIENKTKFWNGVVRNGWWIKFSVYSDHYILLMIISRRTGQTIIRYYDNESEAVAFINFVTTCNANDILHSA*
RCM37_10435677	F023321	AGGAG	MFLNQPQFPTFPTFFTANDIQRKAENITLRTIDFNKALVDHTLTYFDDITGKQFTTYTEKALNFNSNVAEDAKKIIKAESKKSKA*
RCM37_10435678	F081259	N/A	MLTKFIEWLTKPQLSELEYYVTSNNPKNEVDVEQLIKEFNYKRRLQCF*