Scaffold RCM26_1045459

Overview

Basic Information

• Taxon OID: 3300001849
• Scaffold ID: RCM26_1045459
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1727
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Afu?, Para, Brazil
• Coordinates
  • Lat. (^o): -0.083883
  • Long. (^o): -51.051417

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM26_10454592	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIEDDNGNVLGTFGQDGTSVNIWWVMQDEQFQAGIVQQFAVIMAQQIASGDAE*
RCM26_10454593	F001733	N/A	GVVAIAFIASFATVFGDGIRTSETKDIAELGAVLALYGGKALAAGVSASVSAVLAYLTMPFKDVQANSLKVGK*