Basic Information | |
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Taxon OID | 3300001849 Open in IMG/M |
Scaffold ID | RCM26_1022295 Open in IMG/M |
Source Dataset Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3360 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Afu?, Para, Brazil | |||||||
Coordinates | Lat. (o) | -0.083883 | Long. (o) | -51.051417 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022193 | Metagenome | 215 | N |
F028156 | Metagenome | 192 | N |
F042314 | Metagenome | 158 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
RCM26_10222952 | F042314 | N/A | MTHTTGQELKDAGCALVLEHTPERWVADFEQQATALLKANGSFTAEEVVTMIGQPPNHSNAIGAACRQFVKRNGLTGSYEPARSPSAHGRIITRWSMTTF* |
RCM26_10222956 | F028156 | GGTGG | MVANKEFLPVSGDELLARAKLCAKLLEVIEEVTQASELIKDGKYWDAYRVTNKIELMASEVSLDLHGIDIALGEEGKP* |
RCM26_10222957 | F022193 | N/A | MTDTHDSHIKDYYEYHSEQSAFFDHLAEVNKPVDAGIDEFIALQQMERLHEETGTWNADVWGEKGWW* |
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