Scaffold RCM47_1149905

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM47_1149905

Scaffold RCM47_1149905

Overview

Basic Information
Taxon OID	3300001848 Open in IMG/M
Scaffold ID	RCM47_1149905 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	874
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Santar?m, Para, Brazil
Coordinates	Lat. (^o)	-2.484383	Long. (^o)	-55.0075	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053298	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM47_11499053	F053298	AGGAG	MRQCNECAQGVTDTDKVCTACRLAEWKDQQEQARLEADRAAYLAKKKYMRDALKAGVITVLAFLLFLAFVSATKDALQYEWETKPAMLKANGVQ*

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