NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM41_1015475

Scaffold RCM41_1015475


Overview

Basic Information
Taxon OID3300001847 Open in IMG/M
Scaffold IDRCM41_1015475 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8660
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameSantar?m, Para, Brazil
CoordinatesLat. (o)-2.484383Long. (o)-55.0075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014839Metagenome259Y
F021096Metagenome / Metatranscriptome220N
F040589Metagenome / Metatranscriptome161Y
F060705Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
RCM41_10154751F040589N/AMSIAQTAILASALKGGSSSPKPSPSSFSESVAQKPLQWLVVAGAVIYFGGKFIKNVIPSGENLRKGEAETATSIENPWSANTFLAQKIPAGTKLLTSAGAFKEAKKIYDALNTYFVDEADIVVGVFAALPSKTQVAQVVKSFESFYKRNMLEFLKNGKKTFDFGTGGISDALYNRIIENVKRKPKF*
RCM41_101547511F014839N/AMMANENILLSDKLMKLQVENKEMFSRYHKLRRAFNELLDEHQELRERHYQGNTQYDWVERAGLLDDIE*
RCM41_10154752F060705N/AMAISSLNFIISQFETEKYRYFAIYDEDGDRVYLQNDLIDVESAISKLKNFFKDNQGYYTIYVMSKKLLNKNNLKSRDDNTIAKYNVEVSMPVLPQGVNGLTGMGGSSMLPPDDPRSNAPNMFQLLGQMSQVEQQMKLMEKDHQHYREVKELQDRIAKMEEESSKAKGMGAIVDRLGEQFSDPNVLLGLISGVSQLFKKESVVPMHGVSREDIMPMNGVDEQVINNISTRREKMVGAVNFLMQHDKDFPENISRLAELAKNKPAIYSMAVSYLNNL*
RCM41_10154753F021096GGAGGVAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQNSYYFASQTXXXXXXXXXXXXXXXYLPNGQQNVDSSILPSGVLYVSNLKRQIIAQLPLYGLQRSANNGKPTFTYFNDQVWQNCYVEFTNSGFTTPITPLTFRVYYVPKIKN*
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