Scaffold ACM22_1130918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM22_1130918

Scaffold ACM22_1130918

Overview

Basic Information
Taxon OID	3300001846 Open in IMG/M
Scaffold ID	ACM22_1130918 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1290
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	11.3123	Long. (^o)	-56.4267	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031778	Metagenome / Metatranscriptome	181	N
F060659	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
ACM22_11309181	F031778	AGGAGG	MKDGEVMDEQPEDEPEQGTPLPSNLVEVETPSETWKTEFKNEISSLRINGEDVSKIHRAMEELRKMRDSSDRTLRRLIILITLLLCTGLGIGVYSLDYLLRFNADKIDKVIDLNLNAINKSKEGMIKIPLVAISLLEKHPNXXXXXXXXXVWTFLDTFTGTRKNFSDDYMYYTSGVIEDLKNDLGLFWNGSSWNWPEGFGPKN*
ACM22_11309182	F060659	AGGAGG	MAEGKDIYVAINGRVTKPVYQRMQYLANVLDVSMSTLIANSVAEYIHQVTDEKDGSPSVDMEIARFAYSKKKPQEENP*

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