NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM22_1049577

Scaffold ACM22_1049577


Overview

Basic Information
Taxon OID3300001846 Open in IMG/M
Scaffold IDACM22_1049577 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)11.3123Long. (o)-56.4267Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009521Metagenome / Metatranscriptome316Y
F044193Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
ACM22_10495771F009521AGGMKYQILINNGILKGFIAFKGSCLATMQDKYQRLEQQGHKLKLIRGE*
ACM22_10495773F044193GAGGMIIKEYQKEYKDYFMFITVHHSLIEVSVHSYVDDDFEYRNRYIDYSVDEIYESICYRIDNDDLLEVA*

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