Scaffold ACM22_1010611

Overview

Basic Information

• Taxon OID: 3300001846
• Scaffold ID: ACM22_1010611
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 793
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 11.3123
  • Long. (^o): -56.4267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010425	Metagenome / Metatranscriptome	304	Y
F036588	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM22_10106112	F010425	GGTGG	MGNMNRTPDIVVVHKGPRKNSKIKLEIFENTRVDDIISSAKRKPLIPKEHEILDLGVGNGFFEKYKKKYKLK*
ACM22_10106113	F036588	N/A	MYWVKRKIQQIKRVIDFFPLIWNGFDFDYRYALDLFKKQLERMAKDMETNGRLECSDVNSQKIRTAIKLMDKVYDGGYLDDVHIEIDKLYGTTHYDFEETGELDSDGDPFYRLIHWNEGAVDDTHQKEIDKIRNEMLINGREKEKRAHKLLWDFIEHNIQRWWD*