Scaffold ACM22_1004256

Overview

Basic Information

• Taxon OID: 3300001846
• Scaffold ID: ACM22_1004256
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26001
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 11.3123
  • Long. (^o): -56.4267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034210	Metagenome / Metatranscriptome	175	Y
F041249	Metagenome	160	Y
F082768	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
ACM22_100425628	F082768	AGGAG	MSTLKETYRDDPDSRVANMELVLDESETNMINGINTLVDTIITPFIDNEDWVRIATWNFDSIYGCFYRHNEMCNASLDKTKEATREAVRDDIGTEITKGKLSSLIFKNKVQSLNCRRSQLIVDTFENKYKEIFGKSYVPVSKRSSVTDKVYVDKAEKDMLLAEAKKLSA*
ACM22_100425629	F034210	GAGG	MWNKLQNWLMNVLAQWIWMAIMFPIRAFIGLCIAIAKHMPEKVELPYEIRKKTVKQ*
ACM22_100425634	F041249	GAGG	MTEEELLNQAPKKTKRSKNTIKFGMFGLSLGEHNYNRLNAYCLKHNITKATLVRSLVVDYLDRANS*