Scaffold ACM22_1001952

Overview

Basic Information

• Taxon OID: 3300001846
• Scaffold ID: ACM22_1001952
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5203
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 11.3123
  • Long. (^o): -56.4267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F007645	Metagenome / Metatranscriptome	347	Y
F009922	Metagenome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM22_100195210	F009922	AGGAG	MENTFDINSFDKDRTSAPASFRQCQAIGYKFAKKGTKMNWKLQKQITGCLYSLAKDERLTFKKAHTILQAKSLPKVYLDKIALYLKENS*
ACM22_100195214	F001521	AGAAG	MVNMKLWITEFVNEDGAGIGPYIKANTVAEANRIAIQYGLLVLGEIQELEHEVKIEERTVH*
ACM22_10019525	F007645	AGGAG	MAKYVYGKRDTKTVKSIYDRASIGEKAIWNFANSLGVNIVRVRKNKERNETTVGDTFVGYHSGKVSIYQQRGVPSRPLHFVRPTPLGKDNKGMQILEVASNLDVQEVLEALKDYQILMTGSFFGRMKLRFARLFS*