NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold shallow_1094861

Scaffold shallow_1094861


Overview

Basic Information
Taxon OID3300001845 Open in IMG/M
Scaffold IDshallow_1094861 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - lt1kb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location
Location NameMid Cayman Rise, Cayman Islands, UK
CoordinatesLat. (o)18.35Long. (o)-81.85Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010479Metagenome / Metatranscriptome303Y
F032311Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
shallow_10948611F010479GAGMKSFKGYLTEFTIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLVSARDDIMSEVDKQGRRWVMMSW
shallow_10948612F032311N/AKKRKLAKFPVNATDDYKMKKGKPAFKFPSPNSDMMIHVFLRPMKGKKGMMAFNYQLEDK*

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