Scaffold shallow_1019839

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold shallow_1019839

Scaffold shallow_1019839

Overview

Basic Information
Taxon OID	3300001845 Open in IMG/M
Scaffold ID	shallow_1019839 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - lt1kb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	989
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location
Location Name	Mid Cayman Rise, Cayman Islands, UK
Coordinates	Lat. (^o)	18.35	Long. (^o)	-81.85	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078840	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
shallow_10198393	F078840	N/A	FTVKVSPNPLIVKLDNIPTLIFLLDLVTSIVCESEIYSDNFLSKSKSLFGKVLVSTINIV

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