Scaffold RCM35_1157550

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM35_1157550

Scaffold RCM35_1157550

Overview

Basic Information
Taxon OID	3300001844 Open in IMG/M
Scaffold ID	RCM35_1157550 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	620
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ponta de Pedras, Para, Brazil
Coordinates	Lat. (^o)	-1.519367	Long. (^o)	-48.91795	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040003	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM35_11575501	F040003	GGAG	MNLQEQIRKVLRETLESKWNKGNYNYQYGYCHYFAYNIIGKIRKMFPKKKVNYYLLLAQEIDKEDGTIVQDYLVHAYIKIDNMLLDSNGITTMDEAWKRLEEWEERQIHLVPDEYRTEIFDEETNEIPEYFFNNTFCNTGRVKKDMEEFLNN

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