Scaffold RCM35_1019233

Overview

Basic Information

• Taxon OID: 3300001844
• Scaffold ID: RCM35_1019233
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1750
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ponta de Pedras, Para, Brazil
• Coordinates
  • Lat. (^o): -1.519367
  • Long. (^o): -48.91795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001043	Metagenome / Metatranscriptome	794	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM35_10192333	F000450	GGCGG	MGDRANFVFVDGEGETICLYGHWAGYNMLGKLADAVIAARPRWNDESYATRIVISHLIGDQWNMETGWGLHVNEISDNEHKIAIVDFAQQTFSLHEDDNWANRDNKVRGMKNEAIFTMDLSAFCEKYALERLLV*
RCM35_10192335	F001043	N/A	MSQLAIQGDNMSDYKEGFQDGYKYAREEIVEKLREIDIKDIDSWLLDRLSDMIENNKI*
RCM35_10192336	F000311	GGA	MYFELTAPDRLSLEMAYWDAQVMGLDPHFMPPLTFNIGTGSIEKVSGIRDKYNLKETYLSEYEPTGYTRR*