NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM30_1013108

Scaffold RCM30_1013108


Overview

Basic Information
Taxon OID3300001842 Open in IMG/M
Scaffold IDRCM30_1013108 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM30, ROCA_DNA203_0.2um_MCP-S_C_2b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5812
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAfu?, Para, Brazil
CoordinatesLat. (o)-0.156917Long. (o)-50.62255Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F047012Metagenome / Metatranscriptome150Y
F053899Metagenome140Y
F057311Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
RCM30_101310811F057311N/AMQRKSSNQKSKKLKHNIENDIKFWDGVVRNGWWIKFSIYDDHFILLMIVSRYTGQTILRYYSEEQEAIKFINFIITRSAKDTVQSA*
RCM30_101310812F023321AGGAGMFFTQAPQFPTFYTWNDVQRKSEDLTLKTIDFNKTLIDLTITYFNDITGKHFTTYTEKALNFNSNMAEDAKKIVKSEIKKTKA*
RCM30_101310816F047012N/ANGTIKIPFIENEWGLLVERADWDLYIEKGMLQKHQKMYEFHAVTVYKQPFFNDFTKSEVSKIYTYGVLDCDKANLYIIFEWFTDPDENVVFRSTHEFGAYIIEMLTPNTARNEVYNQVCKETI*
RCM30_10131086F053899AGGAGMSRAEFDIIMNRIKNLTEYEIQVHVPEDFEFNGPVPYDMSISGDTAWVKVIAETLEEAKLKAYEYFEGKYK*
RCM30_10131089F024533N/ATTHTKRGAFCSQSCGNVRVHTEEDKKIRSKKLLEYHQTPEGAATREKSSRISSAMKKGEEWSSVEIDDYAVNIPDITDYVAEYDYTWQRAEKW*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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