Scaffold RCM33_1062387

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM33_1062387

Scaffold RCM33_1062387

Overview

Basic Information
Taxon OID	3300001838 Open in IMG/M
Scaffold ID	RCM33_1062387 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	526
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ponta de Pedras, Para, Brazil
Coordinates	Lat. (^o)	-1.519367	Long. (^o)	-48.91795	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
RCM33_10623871	F002398	AGGA	MIPLILFTLINLEPVKNFVSLKTYISVNAKVHCHVYFIHEDIPNFLRVNTLEKSKVDFFDYLDTIDIEHPEVGGY
RCM33_10623872	F060914	GAG	LKRLIKVRSDISSSIYPIQLFQVDDWFTAEEDGVELFRYKSQHVCSIKAKELIRRRKNEKNAKRYQDIQELKEQGKL*

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