Basic Information | |
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Taxon OID | 3300001838 Open in IMG/M |
Scaffold ID | RCM33_1000238 Open in IMG/M |
Source Dataset Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1686 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Ponta de Pedras, Para, Brazil | |||||||
Coordinates | Lat. (o) | -1.519367 | Long. (o) | -48.91795 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000450 | Metagenome / Metatranscriptome | 1126 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
Protein ID | Family | RBS | Sequence |
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RCM33_10002381 | F001043 | N/A | KYAREEIVEKLREIDIKDIDSWLLDRLSDMIENNKI* |
RCM33_10002383 | F000450 | GGCGG | MGDRANFVFVDGEGETICLYGHWAGYNMLGKLADAVIAARPRWNDESYATRIVISNLIGDQWNMETGWGLQVNAIGDNEHKIAVINWKDQTFSLHEEDEYHNKDNKVRGMKNNPIFTMDLSAFCEKYALERLLV* |
RCM33_10002385 | F000868 | AGG | MIEQDGSFLDNENQMVIDAEITSIGEQLFEDWHNANLDEGTFYADYQIALMCDSNYLKGRYNQFYDLKKDDEYYIEWDEEK* |
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