Scaffold RCM39_1010657

Overview

Basic Information

• Taxon OID: 3300001837
• Scaffold ID: RCM39_1010657
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 881
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ábidos, Para, Brazil
• Coordinates
  • Lat. (^o): -1.919017
  • Long. (^o): -55.525717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053899	Metagenome	140	Y
F055551	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM39_10106572	F053899	AGGAG	MSRAEFDIIXXXXXXXXXXXXXVHVPEDFDFYGPVPYDMTISGDTAWVKVIAETLEEAKLKAYEYFEGKYK*
RCM39_10106573	F055551	GGAGG	MNTLKANTNKPWLSSEYDVPVLENEEIWSQRVIDETAHYLWLDIDREENVNKKRESSKE*