Scaffold ACM24_1003257

Overview

Basic Information

• Taxon OID: 3300001833
• Scaffold ID: ACM24_1003257
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM24, ROCA_DNA012_0.2um_2l
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11140
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.2885
  • Long. (^o): -54.512

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F005026	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM24_100325710	F001166	GGA	MATEVGENVQVKANLAFMAKVIAIVGTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDAPITSDYQQFERFKYIEKELDRLRDRVEE*
ACM24_10032578	F005026	N/A	MFELLTLFLTGGGSAAMGSILKGVFGAITDSRQAKYDMEMARECRNNEFALKYQEALNGGEGGAFTRGTRRLLALIGMSTLSFVTCITTVYPSIPLLTTTNITGEGKREFLFGLISFPAEQAPMVVTTGSISLFSCTVVLPLIVGFYFTPGGRR*