NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold ACM6_1049550

Scaffold ACM6_1049550


Overview

Basic Information
Taxon OID3300001832 Open in IMG/M
Scaffold IDACM6_1049550 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM6, ROCA_DNA131_0.2um_27b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1238
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)12.4145Long. (o)-52.2197Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014114Metagenome265Y
F101298Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
ACM6_10495502F101298N/AMIAYICYCYEEFTYPNLMTQNDRDFQKVLQALTAFDKKLSSLETMVDKMAKANYNYATSQQELNKQQSSLNKDLGEGIKMLGNSMSDIIQFLQKQKQV*
ACM6_10495504F014114N/AKATDPEMVQAQKDLAEMSNLSDRVISNDKDLFEELATIQKKLCHISELKSHFLQRYEDILDEQHHLETRLAIFQHEMLHSFELVFRYYKTKKKGFK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.