Scaffold ACM4_1023186

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM4_1023186

Scaffold ACM4_1023186

Overview

Basic Information
Taxon OID	3300001831 Open in IMG/M
Scaffold ID	ACM4_1023186 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	773
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	4.8818	Long. (^o)	-51.3608	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044463	Metagenome / Metatranscriptome	154	Y
F105148	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
ACM4_10231861	F044463	AGGAG	MAHKEKIILAQTQIDNLLELTKDLQYQAFIKSHLLPVKYELQRQMHLLTTSKEYSKIQ*
ACM4_10231864	F105148	N/A	MEMVELSQKEIRALLTFMECRDVEEWSEILDLPELLTLHSKLTSAQTY*

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