Scaffold ACM4_1012949

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold ACM4_1012949

Scaffold ACM4_1012949

Overview

Basic Information
Taxon OID	3300001831 Open in IMG/M
Scaffold ID	ACM4_1012949 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2475
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	4.8818	Long. (^o)	-51.3608	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027171	Metagenome / Metatranscriptome	195	N
F067695	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM4_10129491	F067695	N/A	YTIGDIPTELMAVIRIEWLKGNGSASEVEEYQIEECPDAQAQFSYVVGTALRQGADVCVLTQYQPVDLGVDE*
ACM4_10129493	F027171	GGAGG	VSQVLEIDSLEFDHDGLLHITAVVDEMVLVRKQTLLDPPEWGPALCRGSFYLSDEDLVPATDALLRKLISDRVDDWAPIDPDD*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.