Scaffold ACM4_1004493

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM4_1004493

Scaffold ACM4_1004493

Overview

Basic Information
Taxon OID	3300001831 Open in IMG/M
Scaffold ID	ACM4_1004493 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	674
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	4.8818	Long. (^o)	-51.3608	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012436	Metagenome / Metatranscriptome	280	Y
F074588	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
ACM4_10044931	F012436	GAGG	MPKFLYPNDPKDAKCPHCGEQGKPCSHINSLARAYARGACKKKCE
ACM4_10044932	F074588	AGCAGG	MNEYWEVVLYWSGKVIAQCGQESDARMLCELAPKERIYRRAKFLVDQVIDVTSTTDKQLPGQQGLPAAKIRLEDAQQQVQLRGSDAEVFVP*

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