Scaffold ACM40_1056156

Overview

Basic Information

• Taxon OID: 3300001830
• Scaffold ID: ACM40_1056156
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM40, ROCA_DNA028_0.2um_3l
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 548
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.2875
  • Long. (^o): -53.0005

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060047	Metagenome / Metatranscriptome	133	Y
F082541	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM40_10561561	F060047	AGGAGG	MSNIGNLVDRTYREYLEPMDDIVSYTTLTGAINDTATSVAYNGDLLSVEEEDALDAGAIIEIGQELMICTDLNAVTNTITVTRAARGTTAASHSIGDLI
ACM40_10561562	F082541	N/A	QFPAAMTGSAITFDFSLDNSTWVDVKETDATDTSYTVSAGDVLRVDPSGWAFASNGYFRVTSDGTEAADRSIILHFRHS*