Scaffold ACM3_1002030

Overview

Basic Information

• Taxon OID: 3300001828
• Scaffold ID: ACM3_1002030
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM3, ROCA_DNA076_2.0um_10f
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5929
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 4.8818
  • Long. (^o): -51.3608

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F016805	Metagenome / Metatranscriptome	244	N
F059943	Metagenome	133	N
F103222	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
ACM3_100203013	F059943	AGG	MKATANFAELFPDWNEPNRGPGVSYCVAPNARMFDYELLLAGERSLRGCIRAVDKKDAIRILNNRHPNCSIVQVGPGRRIAPKSKKA*
ACM3_100203014	F103222	N/A	MDREKLVAAMRQEVQQIVALQSMLKGLRQTEERGYQTADQRRLDGIADLFAAGNESLMTAYYKVKDESDS*
ACM3_10020303	F016805	AGG	VDPFLTPLVTAAIIAGVSALWRIDKRASVMDTRVALILEQITALRSDHKERLDDHELRLRGLEQRLK*
ACM3_10020309	F011666	AGG	MDMHPIERTTESMFSEAATAKILEEWLRAGDIKGIYNAALLLNTSLHQQRTMTKWLAGEAARNLGKPELEDELIQEAIFKGDP*