Scaffold ACM21_1019449

Overview

Basic Information

• Taxon OID: 3300001827
• Scaffold ID: ACM21_1019449
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM21, ROCA_DNA110_2.0um_23k
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 772
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Veravirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.6822
  • Long. (^o): -54.4213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F035551	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM21_10194492	F006728	AGG	MAKIDFXNIVVRHKGRTISIAQHWEQTEDGTFLDTQEILDLGISGSDYEADPIRFNGTVDGLINALQAIKMEIDQ*
ACM21_10194493	F035551	GGAG	MTLRELTQALAKHDDVRWGNDGYRVQWEHLPDGPAITIRCTANGFGGAMANSEMKDCYIKETNT*