Scaffold ACM21_1007118

Overview

Basic Information

• Taxon OID: 3300001827
• Scaffold ID: ACM21_1007118
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM21, ROCA_DNA110_2.0um_23k
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1278
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.6822
  • Long. (^o): -54.4213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F054777	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
ACM21_10071182	F010318	AGGAGG	MNVDSDKPRYLECIYEAPITFDLEELGIDWEDVKDYYIKYGTLYVDFKDGTSESYYNADVGETDYKWAVRESILTEDYDLVEGLN*
ACM21_10071186	F054777	AGGAG	MSNKIYDETLERLYEDAIADDERGLLEDKIRDMVLRYGLHQDDDRDEILQLIAEDEFYEQFT*