Scaffold ACM20_106592

Overview

Basic Information

• Taxon OID: 3300001826
• Scaffold ID: ACM20_106592
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM20, ROCA_DNA104_0.2um_23b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1203
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.6822
  • Long. (^o): -54.4213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010571	Metagenome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM20_1065923	F010571	AGGAGG	MSMNTRQAIYIENLYEDFYEKHYEELSKTSDDVEWIENEASRLAEIDLDNFEMEG*
ACM20_1065924	F003976	GGAGG	MSRLYNDYYFEKQDILDTLEKLDMNVRFLNAWVKEPMGFENAKYLLEKNANQEFKWFSRDMVKELVEEETNE*
ACM20_1065925	F010318	AGGAGG	MNVDSDKPRYIECIYEAPITXXXXXXXXXXXXXXXXYIKYGTLYVDFKDGTSESYYNADVGETDYKWAVRESILTEDYDLVEGLN*