Scaffold ACM39_109272

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM39_109272

Scaffold ACM39_109272

Overview

Basic Information
Taxon OID	3300001822 Open in IMG/M
Scaffold ID	ACM39_109272 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM39, ROCA_DNA108_2.0um_23a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	628
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	10.6822	Long. (^o)	-54.4213	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042853	Metagenome / Metatranscriptome	157	N
F047975	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM39_1092722	F047975	AGGAGG	MNISITKEEWAENTVDDMDWKDLYRIAYDVMFDYVKDMSDKEFKEYLIECGYEEVEE*
ACM39_1092723	F042853	GGAG	MSTEGTYLVEIERHYIATIEVEADSERQAIRYAHSDENQHIANRNEDYFYHFQDLLHKPTVVRFKSYEEQYPEED*

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