Scaffold JGI20221J20338_1058859

Overview

Basic Information

• Taxon OID: 3300001810
• Scaffold ID: JGI20221J20338_1058859
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1019
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: California, United States
• Coordinates
  • Lat. (^o): 38.1075
  • Long. (^o): -121.6497
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20221J20338_10588591	F052619	N/A	MKCPVFRPIYKFSRVSEDTSFNVNCDGINPTLTAFVFSLSQVPNSTDFTNLFDMYRITKIQIDWVPEYTQLSDAAPLSNAVNVRFNSAIDLTNFLAPVSVNEVLEFQQLASTGITKPHQRAWQPSFLMGGLVPCTCWLPTTSPNERHYGLKIGVPATGVAMVFRARVKYFVECANVN*