Scaffold WOR52_10017292

Overview

Basic Information

• Taxon OID: 3300001782
• Scaffold ID: WOR52_10017292
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_deep_samples
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7785
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.6478111
  • Long. (^o): -77.1112083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F104375	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR52_100172928	F030967	GAG	MKTLEELEERLEKLEKHEFEDTVTLIEILSTITFFGEVKTKKCKYAKEGQCGLFFLKGDAKKKIPIATECRIKDCDGEPGHYHLELSNVTCAFCPEWLPNKHTKRDSE*
WOR52_100172929	F104375	AGGAG	LNCPECHDTVVFPKGSDGELVCKNCGLVVSSPLTIPSFTKWAPKWFSNWDEDDSETLREWLTTLRTISCQLNVPNFPYREEAARMIRMNSNVLFRSQRFGKNKREAVAALVHLVLKEYDKMRPLKEISQKLSLDHRLVTKYAWTMHKMIKFHGTSLPTKDNLRKSAKDYLRKYGWQLTADAKLMQHAEQMLKNIRKQISGNPISLAAGALYFVCKSRNMKVSKDKIGEAFHISGRTVYSNERRINRLMSEKGIKF*