Scaffold WOR52

Basic Information
Taxon OID	3300001782 Open in IMG/M
Scaffold ID	WOR52_10009312 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_deep_samples
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001782 Open in IMG/M

Scaffold ID

WOR52_10009312 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_deep_samples

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11532
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11532

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (64.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.6478111	Long. (^o)	-77.1112083	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.6478111

Long. (^o)

-77.1112083

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F079544	Metagenome	115	Y
F102444	Metagenome / Metatranscriptome	101	Y
F104375	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
WOR52_100093122	F079544	GAGG	LKRNSLRGRRGVSTTYSSLLFLLLVFSILILLFSTVFSYNRSVEEQMRIEYERSQEKITMSGLKLDEGMTKITHVNISNTGTITVKIRAIYVDNLTMTTLICDPSAYWETFIEPAESLQIPVPDGSGSGITFEPINSKIMAATERGVKTGVHEGLFVFGPTNPEYEPSRFYLGPLMLQFNAFWYNETTSDGVLDPNGTWRPGWKMSHHFGYCAWNVSVMNVDDRNITINRYSSFNVVPVDSPSNELSWYLEPTDQTNYTQFIPSNQTVDIIFIWSDPKLFPEEGGNSATKMVLPECRCMVFLTFYGWFHEHDGTTTSYAQTIPFEAAICIE*
WOR52_100093123	F102444	AGGA	VKIRHKGRRALSPIFASLIILAIVTVLFIPVFIWSTGLTAETGSFWELSGLIATERIVIEEVNLRGGAIDCTIYVRNIGKTAIIANNVIISPPDGTIYTYVDPQFSPDFNSVVQGDLMTVDIPDLGFTPISNYTYTVKVYTERGVGDTYQVVA*
WOR52_100093127	F104375	GAGG	LKCPECRGNLVFLKRLKGEIICEKCGLVISPAQTRQGFVEWTPEWFSNWSEKDSDTLREWLTTLRTVSCQLNLPNFPYREEAARIIRQESDILFRSQRFGKNKREAVAALIHLTLRKYNKMRPLKEICQTLSLDHRLVAKYTWNIRKMGNYHRTFSAKDYLRRNGSNLTSDPTLIQTAERLLTRIGKKINGNPVSLAAGALYFVCKRKGIKISKDEIGKVFYISGRTVYSNESKIRKLMYSESIAF*
WOR52_100093128	F030967	GAGG	MSGKMPHRLEELEKRLEKLEKHRFEDTLTLIEILSNMTFFGGLKMKECQYAKEGQCSFFTLKSNAKGKIPIATECRINDCHFEPSHYHIELSNVTCTLCSIYKPKTHI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold WOR52_10009312

Overview

Ecosystem & Geography

Associated Families

Sequences