Scaffold Deep_1015457

Overview

Basic Information

• Taxon OID: 3300001781
• Scaffold ID: Deep_1015457
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Sites
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2192
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location

• Location Name: Mid Cayman Rise, Cayman Islands, UK
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Depth (m): 4000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F012582	Metagenome / Metatranscriptome	279	Y
F064815	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Deep_10154573	F005749	AGGAG	MKKSWLLMMSFDEHDSSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEIDKKSTYDKIVDKEDSEEMFFMDSKRNWNNGKTYEDLKEEALEEMIMGSLIKGEMGYA*
Deep_10154575	F064815	N/A	MAKKKKEKIPFHIAHNYKHFELTGGGVKFWAKDEDDAKLYCNKIGWSPLSLKEIKEK*
Deep_10154577	F003091	AGGAG	MTMLPQKPITKPGEGKERQKYVSQERYLEERYQISFGFKGPKRLEGESHEDFHTRRKAENGLLHEYLRGVWMTDGKCTALTPEPCINCT*
Deep_10154578	F012582	N/A	MTEFHKKLRHLSTTMLHWAEDNKTQRKEVEGIAGDYEIPQRNGVDWKEDFKFVTKLDRMLSSDIGDKLKKKEMKMCNKLYRYYGSVYDPV*