Scaffold ACM18_1033126

Overview

Basic Information

• Taxon OID: 3300001778
• Scaffold ID: ACM18_1033126
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.2875
  • Long. (^o): -53.0005

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002716	Metagenome / Metatranscriptome	535	Y
F005495	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM18_10331262	F002716	GAGG	MSKYNLETEEDMASYLDINYGHGLSAVYTNYQDVQSTINIILNDEYLEDEEGIGIEGTQPIAYCRSIDVPNVLHDDTLAVSAVKDVDGNILKAAQSYKVVNVQKDKTGFTALMLEEI*
ACM18_10331263	F001582	N/A	MPLESAADFNSYVDTSTGNGVTATFFEVQQTLWDSRQGLVDSWFDIDSGDSYSINLIIDQEYFSIDTGSVAVEGFQPKAYIKHSDVPYISHDDRIIVNAITTNNGSVLVPQTSFLVKNVRPDNVGMVEVILEEQ*
ACM18_10331264	F005495	N/A	NLNMKKYKILTDTMAGGSKVHAGDIVELPEHEGHALCGYGKAEVHVGKPKAEKEDRSVGLKTSKV*