Scaffold ACM18_1011565

Overview

Basic Information

• Taxon OID: 3300001778
• Scaffold ID: ACM18_1011565
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8172
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.2875
  • Long. (^o): -53.0005

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003661	Metagenome / Metatranscriptome	474	Y
F004722	Metagenome	426	Y
F017824	Metagenome	238	N
F047029	Metagenome	150	N
F051901	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
ACM18_101156511	F002867	N/A	MTVVHSDDMGDGFMLEQIENDRGEIYYRACKDSICRYAEDEYIARMYLEGMGWTP*
ACM18_10115652	F047029	GGA	VTSKVGSTPDNPIKLNQYRVTIWPKHGATENIYMEAPDVYTAQQYTRRVYPEHTVLAIKNVLDL*
ACM18_10115653	F004722	N/A	MSRTGRQIVLEWLNKEIRMARTADLQRAAAFLEWARGIRKGCSRQRGGARVAQSNAWRKRVDSDVRW*
ACM18_10115656	F017824	N/A	MMKNGVLQWQEDFERSQRLGEGRSRTSAERSELYELQIWLAGQGAMRDLIRAESLQQAILFAENRYPGCRVDVPPKTAKKPKLARSRTSPSVAAKNRKKSADKK*
ACM18_10115657	F051901	N/A	MTPPPKVNFTKAAADMARADYLDELFFKDGRDQVSHPLHGTYTGLYQKYTLQKLG*
ACM18_10115659	F003661	N/A	MDPTAAAAVAIAIAAGSEIIGMLPIKDNSWVQLVLRILQAAFPAKKEK*