Scaffold ACM18_1006535

Overview

Basic Information

• Taxon OID: 3300001778
• Scaffold ID: ACM18_1006535
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2391
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.2875
  • Long. (^o): -53.0005

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036651	Metagenome / Metatranscriptome	169	N
F077490	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM18_10065354	F036651	GGA	MREIKLNEVGKTKPLILPIREIRGYYRDVYTGENKVQTADKEYVVRDSTTEISYLIGVNR
ACM18_10065357	F077490	GGAG	MQNKIKVTGTINSWGHNSIDSAEVFFNKHIEDCSCGGSYSFSAMLQMEQIKEGNLVDDCATIECGNCYSMLDVDDYDITLQIPNNLADKFAKEKIWCKSKDYVEMSQGITTKDWEAQMGNKSFEELAEQELKAQGVI*