NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CSTRM20_100505

Scaffold CSTRM20_100505


Overview

Basic Information
Taxon OID3300001756 Open in IMG/M
Scaffold IDCSTRM20_100505 Open in IMG/M
Source Dataset NameWastewater microbial communities from Belvaux, Luxembourg - M20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3414
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Belvaux, Luxembourg

Source Dataset Sampling Location
Location NameBelvaux, Luxembourg
CoordinatesLat. (o)49.506095Long. (o)5.943536Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F022442Metagenome / Metatranscriptome214Y
F031138Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
CSTRM20_1005051F022442AGGAGGVTFVPIGEARLDLYTDAMLLDIGPDTFVVPLDRLADLTAHRRHEVAVSRRYWGDAPGTFCDVEQGIRLRRSQTDRSLMMIVQGCVYSIPVYLILEVKDGIREACTISML
CSTRM20_1005056F003987GGAGGMIPALPCGTFSDGDTPAGAFYVAAFEADDAPHHVGEYRIDVVIRALRALQACGYDDVEIGSIFAPDPEHVHLLLIGLDGEARFGDRQLGCIAVLPVGVE*
CSTRM20_1005057F004383GGGGGMACDNLLERAFMARIRADEYREKLAALQQEFDERPDVIEIKRRIERCEEERRQCIAQAKAAGISKQGSFRLKIRTRKQRTVIPKLFFAKHGAEAFIECCTVAIGKAEALLGKAALDDCCEVEVKEIGVSVEYERPEAGE*
CSTRM20_1005058F031138GGAGMTKRDIYVGPCALARKTEAGTDAQNGTFDRILVAAAEHAAREVGLPGRADRMIACRSCGAETTADRICPDCAEALRVERAEALAERCRVHRVRYVEDLPVSVLEEMQAEWGRR*
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