Scaffold CSTRM28_102000

Overview

Basic Information

• Taxon OID: 3300001754
• Scaffold ID: CSTRM28_102000
• Source Dataset Name: Wastewater microbial communities from Belvaux, Luxembourg - M28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1661
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Belvaux, Luxembourg

Source Dataset Sampling Location

• Location Name: Belvaux, Luxembourg
• Coordinates
  • Lat. (^o): 49.506095
  • Long. (^o): 5.943536

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F031138	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
CSTRM28_1020002	F031138	AGAAGG	MTKKKTYVGPCALARKTEAGTDAQNGTFDRILVAAAEHADREAGLPGRVDRTMIYCHSCGCETTADRICDACAEARREERAAALGELCRVHRVRYVEDLPVSVLEEMQAEWGRR*
CSTRM28_1020003	F004383	GGGGG	MACDNLLERAFMARIRADEYREALATLQQEFDERPDVIEIKRRIERCEEERRQCIEQAKAAGISKQGSFLLKVRTRKTRTVVPERFFARFGAEAFVRCSTIAIGKAEALLGKGTFDDCCEVEVKDIGTTVEYERPEVGE*
CSTRM28_1020004	F003987	GGAGG	MIPALPCGTFSDSNTPAGAFYVAAFEDGDQPHHVTECRIETVVRALRALQACGYDDVEVDSIEQGGKQHLLLIGLDGGARFGDRQLGCIAVAPVGVE*