Scaffold JGI2173J19968

Basic Information
Taxon OID	3300001752 Open in IMG/M
Scaffold ID	JGI2173J19968_10002264 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001752 Open in IMG/M

Scaffold ID

JGI2173J19968_10002264 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7822
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7822

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.640199

Long. (^o)

-77.109447

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F079544	Metagenome	115	Y
F102444	Metagenome / Metatranscriptome	101	Y
F104375	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI2173J19968_100022642	F079544	AGG	VTEEKSLKREILRDRRGISKVYTSLAFLLLAFSILTLLFFAFFDYNFAVHEQMRIEHERSQEKIIISGLELNLTDQTYLSHIIVNNTGTIGVRIRGIYVTNSTTTSLICDPSTYMDTQIEPLEYLSIRFPKEVPFEPNAKITVATERGVKTKEYEGPLIFGPPKPQAKYDPTRLYIGPLMLQFDAFWYRKTFQNGTLDLTDSWHLGWSMPKGFGYCAWNITVMNIDDRNITINRFSSFTAVPNDSPSSQLTWHLEPTNQTTLTQFLAVNQTQNIIYIWSTPKSIPEEGGTNSATKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVT*
JGI2173J19968_100022643	F102444	N/A	MVSTLKISGDRRAISPIFASLIILAVVTVLFIPVFIWSTGLTAETKSFWEISGLIATERIVVEEVNLRVNVTSCTIYVRNIGKTAIIVDNVFISPPDGSLYKFEESQFSTDFDSVVQGDLMTVGIPDLGFIPTGGETYTVKVFTTRGVGDTYQVVA*
JGI2173J19968_100022647	F104375	N/A	MSRGQSSQGFTKWAPKWFSNWNENDSDTLREWLTTLRTVSCQLNLPDFPYREETARTIKLKSEMLFRSQRFGKNKREAIAALVHLVLRKYNEIRPLREICETLSLDHRLVTKYAWTMRKMTGFHRTFSPKDYLRKYGWKLTSNAELIQRAEQLLASLRNEISGNPVSLAAGAFYFVCKSRKMRMSKDEIGEAFHISGRTVYSNERRISRLMSTKSFGL*
JGI2173J19968_100022648	F030967	GAGG	VNVEELKRLEEFEKRLNKLEAHGFEDTLTLVEILSSITFFGGLKMEKCKYAKEGQCGFFFLKNEAKKKIPMASDCRIKDCKGEPDHCHLELSNVTCAFCPKARIPRT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI2173J19968_10002264

Overview

Ecosystem & Geography

Associated Families

Sequences