Scaffold JGI2172J19969

Basic Information
Taxon OID	3300001751 Open in IMG/M
Scaffold ID	JGI2172J19969_10000702 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001751 Open in IMG/M

Scaffold ID

JGI2172J19969_10000702 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14690
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14690

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (90.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.640199

Long. (^o)

-77.109447

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F079544	Metagenome	115	Y
F102444	Metagenome / Metatranscriptome	101	Y
F104375	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI2172J19969_100007023	F079544	GAG	MKIEDERSQEKIVLSGLELDNETCLSTVSVKNEGTIEVKVRAIYVANSTTTTLVCDPSTYMDTHIAPDNSLNMSLPTGISFEPDAKIIVATERGVKTKEYEALLVFGPPKPEWEYDPTKLYIGPLMLQFDAFWYHKTRGDGTLDPNDPWHPGWSIPKGFGYCAWNITVMNIDYRNITINRFSTFNVVPNDSPSNQLPWYLEPTNQTDLTQFLPVNETRNILYIWADPKEASGTNRPQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVIG*
JGI2172J19969_100007024	F102444	AGG	LKVNSDRKALSPIFATLIILAIVTVLFIPVFIWSTGLTGETKSFWHISGEIATERIVIEEVNLRGGIQNCTIYVRNIGKTAIIVDDVFISSPSNSLHVYEKADFNTDPDSVVQGDLMTVTISDLGGLNPVGNVTYTVQVFTSRGVGDTYQVVA*
JGI2172J19969_100007028	F104375	AGAAGG	LNCPECHGTLVCPRGSNGESVCKNCGLVISVPPVTPSFTKWAPRWFSNWNEDDSETLREWLTTLRTVSCQLNIPNFPYREEAARMIRLNSKKLFRSQRFGKNKREAVAALVHLVLKEYNKMRPLKEISQKLSLDDRLVTKYAWTMHKTVKSHRTSSTKSKLRKSAKDYLRKYGWKLTADAKLIQQTEKMLKIIRKQIGGNPISLAAGAFYFICKNRNIKVSKDKIGEAFHISGRTVYSNERRINKLISEKGIKF*
JGI2172J19969_100007029	F030967	N/A	MKSLEEFEERLEKLEKREFEETLTLIEILSTMTFFGGVKMKKCKYAMEGQCGLFFLKSDAEKKTPISTDCRIKGCKGEPGHRHLELSNVTCAFCPEWLPNQQTKQGSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI2172J19969_10000702

Overview

Ecosystem & Geography

Associated Families

Sequences