Scaffold JGI24025J20009_10091891

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24025J20009_10091891

Scaffold JGI24025J20009_10091891

Overview

Basic Information
Taxon OID	3300001749 Open in IMG/M
Scaffold ID	JGI24025J20009_10091891 Open in IMG/M
Source Dataset Name	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	905
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location Name	Coal Oil Point, Santa Barbara, CA
Coordinates	Lat. (^o)	34.39225	Long. (^o)	-119.845662	Alt. (m)		Depth (m)	47
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020112	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24025J20009_100918913	F020112	AGGAGG	LVSKAFKKCVKLVEEMLRKGYRLQISSTHVEKLIKIHIGADKRTVQKYMRLLTEDFGFLQTVTKNPFGIYIYRIDIETIEQYVSEHMKERLRQLTLLDLRLREEEAG*

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