NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24669J20092_10032597

Scaffold JGI24669J20092_10032597


Overview

Basic Information
Taxon OID3300001744 Open in IMG/M
Scaffold IDJGI24669J20092_10032597 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameItaly: Sant'Andrea, Tuscany
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042609Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
JGI24669J20092_100325972F042609GGAGLHREVGGHNFAYFSTFVGDVLVKFRHDVFTAVYSGRGAILLELRNAMTTEPGHIMFVDNFGMSRVVVVVVVGGSEERLEVCYEKESNGVLLFFVGEFQLAILGVGILDLLRWVLETERDVSFESGLVSEWMEAAVTHVCRXXDVWICVPLNETC*

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