Scaffold JGI24515J20084_1015510

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI24515J20084_1015510

Scaffold JGI24515J20084_1015510

Overview

Basic Information
Taxon OID	3300001743 Open in IMG/M
Scaffold ID	JGI24515J20084_1015510 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-38
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	685
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.9853	Long. (^o)	-145.0838	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003635	Metagenome / Metatranscriptome	476	Y
F038418	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24515J20084_10155102	F038418	GGAG	MTDKNQQWIWWINKENPKRISRTTLGKFLKDINKGLTSNNTSIQDARSCVFLTRMDFNKPYIFFCTNKDAMKWIARNYK*
JGI24515J20084_10155103	F003635	AGGAG	MNEKNTQSLLDLINKLITLVGKNVDNINNLAQEIADLKDKK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.