Scaffold JGI24515J20084_1003247

Overview

Basic Information

• Taxon OID: 3300001743
• Scaffold ID: JGI24515J20084_1003247
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1465
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24515J20084_10032472	F015741	AGGA	VVCLTFSTGCSFPWAQMVPPVANFALGFYDANDYYSKECLWYDEVKLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYKEVCKKDKNMADKMKSKADRILN*
JGI24515J20084_10032473	F002078	AGCAG	MEMFADQSWFQIAGQIVLIFTAVTGALPDRFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAHAEVEEEIDKAKAKVRTRSGMPDVLDGM*