Scaffold JGI24515J20084_1000364

Overview

Basic Information

• Taxon OID: 3300001743
• Scaffold ID: JGI24515J20084_1000364
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3603
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015790	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24515J20084_10003647	F015790	N/A	MLGPDPSIYTHVWNMKEIDTKLLPFLEQLGGKKIQKTRLREHPPRIITTAQEAKAKEVMAIDYKNGWCKELISTKI*